Vol 75, No 4 (2024)
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Genetic analysis of the PAPP-A2 gene and evaluation of free IGF-1, IGFBP-5, and ALS concentrations in a group of 22 patients with idiopathic short stature

Magdalena Banaszak-Ziemska1, Aleksandra Rojek1, Marek Niedziela1
Pubmed: 39279312
Endokrynol Pol 2024;75(4):428-437.

Abstract

Introduction: Short stature is one of the main reasons for consultation in outpatient clinics and paediatric endocrinology departments and is defined as height below the 3rd centile or less than -2 standard deviations (SDs).

Material and methods: The study’s overarching aim was to analyse the PAPP-A2 gene at mutation sites described to date and at exons 3, 4, and 5, which encode the fragment of the catalytic domain with the active site of the pregnancy-associated plasma protein A2 (PAPP-A2) protein. The secondary aims of the study were clinical and auxological analysis of a group of patients with idiopathic short stature and biochemical analysis of growth hormone–insulin-like growth factor-1 (GH–IGF-1) axis parameters not assessed as part of the routine diagnosis of short stature, such as free IGF-1, insulin-like growth factor binding protein 5 (IGFBP-5), and acid-labile subunit (ALS) levels. Molecular analysis of the PAPP-A2 gene was performed using polymerase chain reaction (PCR) and direct sequencing. Biochemical analysis of free
IGF-1, IGFBP-5, and ALS was performed by enzyme-linked immunosorbent assay (ELISA).

Results: The mean height standard deviation score (HSDS) in the study group was –2.95. None of the patients exhibited previously described mutations in the PAPP-A2 gene or mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein. In 4 patients, the known, non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 was found.

Conclusions: Free IGF-1 levels correlate better with height and HSDS than total IGF-1 levels. The previously described mutations in the PAPP-A2 gene and mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein were not detected; only the known and non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 of the PAPP-A2
gene was observed.

Original paper

Endokrynologia Polska

DOI: 10.5603/ep.100030

ISSN 0423–104X, e-ISSN 2299–8306

Volume/Tom 75; Number/Numer 4/2024

Submitted: 30.03.2024

Accepted: 05.05.2024

Early publication date: 02.07.2024

Genetic analysis of the PAPP-A2 gene and evaluation of free IGF-1, IGFBP-5, and ALS concentrations in a group of 22 patients with idiopathic short stature

Magdalena Banaszak-ZiemskaAleksandra RojekMarek Niedziela
Department of Paediatric Endocrinology and Rheumatology, Institute of Paediatrics, Poznan University of Medical Sciences, Poland

Magdalena Banaszak-Ziemska, Poznan University of Medical Sciences, 27/33 Szpitalna Street, 60–572 Poznan, Poland, tel.: +48 61 849 1481, fax: +48 61 848 0291; e-mail: mbanaszak-ziemska@ump.edu.pl

This article is available in open access under Creative Common Attribution-Non-Commercial-No Derivatives 4.0 International (CC BY-NC-ND 4.0) license, allowing to download articles and share them with others as long as they credit the authors and the publisher, but without permission to change them in any way or use them commercially

Abstract
Introduction: Short stature is one of the main reasons for consultation in outpatient clinics and paediatric endocrinology departments and is defined as height below the 3rd centile or less than -2 standard deviations (SDs).
Material and methods: The study’s overarching aim was to analyse the PAPP-A2 gene at mutation sites described to date and at exons 3, 4, and 5, which encode the fragment of the catalytic domain with the active site of the pregnancy-associated plasma protein A2 (PAPP-A2) protein. The secondary aims of the study were clinical and auxological analysis of a group of patients with idiopathic short stature and biochemical analysis of growth hormone–insulin-like growth factor-1 (GH–IGF-1) axis parameters not assessed as part of the routine diagnosis of short stature, such as free IGF-1, insulin-like growth factor binding protein 5 (IGFBP-5), and acid-labile subunit (ALS) levels. Molecular analysis of the PAPP-A2 gene was performed using polymerase chain reaction (PCR) and direct sequencing. Biochemical analysis of free IGF-1, IGFBP-5, and ALS was performed by enzyme-linked immunosorbent assay (ELISA).
Results: The mean height standard deviation score (HSDS) in the study group was –2.95. None of the patients exhibited previously described mutations in the PAPP-A2 gene or mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein. In 4 patients, the known, non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 was found.
Conclusions: Free IGF-1 levels correlate better with height and HSDS than total IGF-1 levels. The previously described mutations in the PAPP-A2 gene and mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein were not detected; only the known and non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 of the PAPP-A2 gene was observed. (Endokrynol Pol 2024; 75 (4): 428–437)
Key words: idiopathic short stature; PAPP-A2; IGF-1; free IGF-1

Introduction

Idiopathic short stature (ISS) is currently defined as height < –2 standard deviations (SDS), normal birth size (birth weight and length > –2 SDS), absence of abnormal physical features, normal general screening investigations, normal body proportions, and absence of major dysmorphic features [1].

In 2016, Andrew Dauber et al. first described 2 unrelated families with a confirmed autosomal recessive mutation in the PAPP-A2 protease gene [2]. In members of the described families, the progressive loss of growth velocity without a significant pubertal growth spurt, height below the target height, microcephaly, and long and thin bones were observed. In laboratory tests, a characteristically elevated concentration of growth hormone and growth hormone-dependent factors, such as total insulin-like growth factor (IGF-1), insulin-like growth factor binding proteins (IGFBP): IGFBP-3, IGFBP-5, acid-labile subunit (ALS), and IGF-2, and decreased free IGF-1 were documented [2]. Evaluation of the parameters of the hypothalamic-pituitary-somatomedin axis, especially the observed disproportion between the concentrations of total and free IGF-1, indicates that pregnancy-associated plasma protein A2 (PAPP-A2) protease is the key regulator of the bioavailability of IGF-1 [3]. The bone age was consistent with the chronological age [2]. On the basis of changes in the proportions of total and free IGF-1, scientists assumed that treatment with recombinant human insulin-like growth factor 1 (rhIGF-1) should result in a change in the growth hormone (GH)–IGF-1 axis parameter balance, ultimately resulting in an increase in active IGF-1 and improving the growth rate in patients with a confirmed mutation in the PAPP-A2 gene. Available data confirmed that rhIGF-1 therapy improved the patients’ growth rate and height standard deviation score (HSDS) [4–6].

Short stature is a widely known topic of interest; however, subsequent reports have emphasised that further work is necessary for a broader understanding of this socially important problem. To date, 3 families with a confirmed mutation in the PAPP-A2 gene have been described. No papers analysing the occurrence of mutations in the PAPP-A2 gene in patients with ISS either in Poland or elsewhere have been published. The importance of this problem is additionally related to the availability of rhIGF-1, which could improve the final height of patients with a confirmed mutation in the PAPP-A2 gene.

Material and methods

Aim of the study

The main aim of this study was to analyse the PAPP-A2 gene in a group of 22 patients with ISS. The detailed aims were as follows:

  • free IGF-1, IGFBP-5, and ALS analysis;
  • analysis of the PAPP-A2 gene (Gene ID: 60676, 1q25.2) at the sites of the mutations described to date, i.e. c.3098C> T, p.Ala1033Val in exon 8, and p.D643fs25* in exon 3;
  • analysis of exons 3, 4, and 5, which encode the fragment of catalytic domain with the active site of PAPP-A2 protein, in the absence of the known mutations.
Study group

The study group consisted of 22 patients (16 girls, 6 boys) with ISS (HSDS < –2) diagnosed in the Department of Paediatric Endocrinology and Rheumatology, Poznan University of Medical Sciences. The study group was divided according to the stage of puberty into G1 (Th1) and G5 (Th5), with 12 and 10 patients, respectively. One girl was at Tanner stage 3 (during the analysis, she was included in the Tanner stage 5 group). Patients were enrolled according to the following recruitment criteria:

  • height below 3rd centile or –1 SD below target height (TH);
  • absence of chronic diseases that could be the cause of short stature;
  • serum level of GH above 10 ng/mL in at least one of the 2 performed tests: after stimulation or after sleeping;
  • turner syndrome excluded.

The control group consisted of 9 patients: 2 girls in the Th1 stage, 2 girls in the Th5 stage, 3 boys in the G1 stage, and 2 boys in the G5 stage, who were recruited from patients at the Department of Paediatric Endocrinology and Rheumatology, Poznan University of Medical Sciences.

Auxological analysis

The birth weight (BW) and the birth length (BL) were expressed as SDS using reference data by Fenton et al. [7]. Small for gestational age (SGA) was described as birth weight or birth length < –2 SD. The patient’s postnatal height and weight were assessed by the attending physician. Height measurements were always taken in the same room using a Harpenden-type measuring device, with an accuracy of 1 mm; 3 measurements were taken, and the mean was calculated. The auxological analysis of height, weight, body mass index (BMI), and the ratio of weight to height referred to the Polish population growth chart developed by Palczewska and Niedzwiecka and were expressed as centile and SDS [8]. The target height was estimated according to the Tanner formula [9] and was expressed as height and target height SDS (TH SDS). The corrected height standard deviation score (corrHSDS) was defined as the difference between HSDS and TH SDS. Bone age (BA) was assessed according to Greulich and Pyle [10], and predicted adult height (PAH) was estimated according to the Bayley and Pinneau formula [10]. IGF-1 and IGFBP-3 values were expressed as centile positions within the reference ranges reported by Blum [11]. Quantitative variables are presented as the mean and SDS, and qualitative variables are presented as proportions. Due to the size of the groups, quantitative variables were compared using the Mann-Whitney U test. The chi-square test and, where necessary, Fisher’s exact test were used to compare qualitative variables. Correlations of 2 quantitative variables were performed using the Spearman method. P < 0.05 was considered statistically significant. Statistical calculations were performed using the SPSS program (version 21, IBM, SPSS Statistics).

Biochemical analysis

Growth hormone secretion was assessed after falling asleep and after stimuli. The DIAsource HGH-IRMA, DIAsource IGFBP-3-IRMA and DIAsource IGF-1-IRMA DIAsource Immuno Assays kits were used to assess the concentrations of growth hormones IGFBP-3 and IGF-1, respectively, using the immunoradiometric method according to the manufacturer’s recommendations. The concentrations of free IGF-1, IGFBP-5, and ALS were evaluated with ELISA (free IGF-1, Ansh Labs; IGFBP-5, SunRed; and ALS, Mediagnost, Germany) according to the manufacturer’s recommendations. Blood samples were collected from individuals after obtaining informed consent.

Genetic analysis

Molecular tests were carried out in the Laboratory of Molecular Endocrinology, Department of Paediatric Endocrinology and Rheumatology of Poznan University of Medical Sciences and were approved by the Bioethics Committee (consent of the Bioethics Committee of the Poznan University of Medical Sciences, resolution no. 134/4 of 1 February 2018).

We performed genetic analysis with PCR and direct sequencing of the PAPP-A2 gene (Gene ID: 60676, 1q25.2) at the sites of mutations described to date, i.e. c.3098C> T, p.Ala1033Val in exon 8, and p.D643fs25* in exon 3 [2]. In the absence of these mutations, analysis of exons 3, 4, and 5, which encode fragment of catalytic domain with the active site of pappalysin A2, was performed. The oligonucleotides (Sigma Aldrich) used in PCR were designed using Primer3 (http://bioinfo.ut.ee/primer3-0.4.0/, access date: 10 April 2020), and their sequences and polymerase chain reaction (PCR) conditions are listed in Table 1. Received sequences (chromatograms) were analysed using Vector NIT 9.0 Software (Invitrogen) and compared to the reference wild-type sequence (NCBI Reference Sequence: NC_000001.11). The identified DNA variants were analysed using Mutation Taster software (http://www.mutationtaster.org/, access date: 10/04/2020).

Table 1. Oligonucleotide sequences and polymerase chain reaction (PCR) conditions used to amplify selected fragments of the PAPP-A2 gene

Oligonucleotide name

Sequence 5’->3’

Product size [bp]

Annealing temperature [°C]

Elongation [s]

PAPP-A2-E3F

CACCAGGTCCACAATTCCAC

391

60

30

PAPP-A2-E3R

TGTCTTATTCAGGGAGTGTGTGA

PAPP-A2-E8F

GCTGCTAAGGGCTACTCATTTT

698

60

60

PAPP-A2-E8R

TACGGTAAAATCCCCTCTGAAA

PAPP-A2-E3D1F

AGCTCTGAGGATGGGCACTAT

588

60

40

PAPP-A2-E3D1R

ATAGCCTGTGAGTGGGTGCT

PAPP-A2-E4D2F

CTGGGAGTGCCATTAGAATCTG

391

60

40

PAPP-A2-E4D2R

ACTAAGTGCCATTCTCAGCACA

PAPP-A2-E5D3F

GGCAAGAAAGAAAAGCAATGAC

569

60

40

PAPP-A2-E5D3R

CTCCGACACAAATGACCACTTA

Results

Auxological data

The mean HSDS in the study group was –2.95, and most of the patients demonstrated severe short stature (Tab. 2). Detailed auxological data are presented in Table 2. Two patients were born prematurely. The birth weight of 2 other patients met the criteria for SGA. The birth length of all patients was within the normal range for gestational age. The mean SDS was –0.82 for birth weight and 0.9 for birth length. None of the patients was treated with growth hormone for short stature with SGA. The mean HSDS in the control group was –0.32.

Table 2. Detailed auxological data of the study group

Nr

Sex

CA [years]

BA [years]

Height [cm]

HSDS

TH [cm]

TH SDS

Corr HSDS

Weight [kg] [centile]

Weight-to-height ratio [centile]

BMI [centile]

Tanner stage

1

M

10 8/12

8

117.0

–4.23

160.0

–3.1

–0.58

25.0 [< 3]

75

18.3 (50–75)

G1

2

F

9 3/12

8

116.0

–3.5

147.0

–3.7

1.2

23.0 [3]

75

17.1 (50–75)

Th1

3

F

16 10/12

16

152.0

–2.24

172.0

1.6

–3.84

47.0 [10–25]

50–75

20.3 (25–50)

Th5

4

F

16 10/12

15

141.0

–4.17

152.0

–2.0

–2.12

32.0 [< 3]

25

16.1 (< 3)

Th5

5

F

11

11

130.9

–2.47

154.0

–1.8

–0.5

35.0 [50]

90–97

19.2 (75)

Th5

6

F

17

15

146.0

–3.3

157.0

–1.6

–1.47

36.0 [< 3]

25

16.9 (3)

Th5

7

M

16 9/12

17 1/12

159.0

–3.16

181.0

0.5

–3.66

51.5 [< 3]

50–75

20.2 (25)

G5

8

M

17 7/12

17

164.0

–2.40

184.0

0.7

–2.84

60.0 [10]

75

22.3 (50–75)

G5

9

F

17 8/12

17

146.0

–3.39

155.0

–1.8

–1.37

36.6 [< 3]

25–50

16.9 (< 3)

Th5

10

F

13 3/12

14

139.0

–3.31

156.5

–1.6

–1.74

57.0 [75–90]

> 97

29.5 (> 97)

Th4

11

K

12 6/12

11

139.4

–2.63

158.0

–1.2

–1.4

29.5 [< 3]

3–10

15.0 (3–10)

Th1

12

K

12 5/12

11

142.5

–2.00

162.0

–0.8

–2.14

29.0 [< 3]

10

14.4 (3)

Th2

13

M

6 11/12

7

107.2

–3.7

171.0

–1.0

–3.2

16.1 [< 3]

10

14.0 (10)

G1

14

M

9 11/12

7

121.1

–2.9

167.0

–1.8

–1.35

24.0 [3]

75

16.4 (25–50)

G1

15

K

11 6/12

11 6/12

136.8

–2.02

162.0

–0.9

–1.14

27.8 [< 3]

25

14.6 (3–10)

Th1

16

K

12 7/12

11 6/12

140.5

–2.48

160.0

–1.1

–1.06

40.5 [10–25]

75–90

20.4 (75)

Th3

17

K

12

12

136.1

–2.60

155.0

–1.7

–0.92

30.0 [< 3]

50

16.2 (25)

Th1

18

K

11 8/12

13

128.4

–3.47

155.0

–1.8

–1.7

24.0 [< 3]

50

14.6 (3–10)

Th2

19

K

15 9/12

16

151.9

–2.13

156.0

–1.45

–0.68

42.5 [3]

3–10

18.2 (10–25)

Th5

20

K

12 10/12

12 6/12

140.7

–2.74

151.0

–2.5

–0.24

42.0 [25]

> 90

21.5 (75–90)

Th5

21

M

6

3 3/12

102.5

–3.75

160.0

–3.1

–0.77

18.0 [< 3]

75–90

17.0 (75–90)

G1

22

K

9

7

114.5

–3.72

159.0

–1.2

–2.8

17.5 [< 3]

< 3

13.2 (3)

Th1

Biochemical data

The mean concentration of growth hormone assessed after falling asleep in the study group was 15.4 (9.4) ng/mL, and in stimulation tests it was 13.0 (6.0) ng/mL. Patient 21, despite having a concentration of growth hormone below 10 ng/mL in both tests, was qualified for the study group due to the qualification of 2 of his siblings and the short height of his parents (HSDS –3.0 in his mother and –3.36 in his father). Patient 10, due to the progressive loss of growth rate despite rhGH treatment and the observed high concentrations of IGF-1, was also qualified for the study, although in the assessment of growth hormone secretion she had concentration values below 10 ng/mL. In Patient 3, the concentration of growth hormone was also below 10 ng/mL, but due to the patient’s age and the completed process of sexual maturation during the qualification, the standards of growth hormone secretion of the European Society of Endocrinology for adult patients were referenced [12]. Detailed laboratory data are presented in Table 3.

Table 3. Biochemical parameters of the growth hormone–insulin-like growth factor 1 (GH–IGF-1) axis

Nr

Max GH after sleeping [ng/mL]

Max GH in stimulation test [ng/mL]

IGF-1 [ng/mL] [centile]

IGFBP-3 [ng/mL] [centile]

Free IGF-1 [ng/mL]*

Free IGF-1/IGF-1 ratio

IGFBP-5 [ng/ml]#

ALS [ng/mL]**

1

18.6

11.6

157.0 [35]

4487.0 [95]

11.1

0.07

73.6

6203.0

2

19.0

8.8

194.0 [50]

5379.0 [> 95]

12.9

0.06

46.1

11781.0

3

1.9

8.6

363.0 [30]

4012.0 [80]

52.5

0.14

91.1

11023.0

4

29.0

7.0

295.0 [10]

4375.0 [90]

6.5

0.02

58.1

10421.0

5

26.8

-

941.0 [> 95]

6036.0 [> 95]

35.3

0.03

86.5

13944.0

6

-

13.6

196.0 [3]

3057.0 [50]

15.4

0.07

116.0

4941.0

7

11.5

10.5

231.0 [5]

3097.0 [70]

37.7

0.13

113.2

9101.0

8

30.7

16.3

456.0 [60]

4946.0 [95]

52.5

0.11

249.5

7940.0

9

28.3

-

341.0 [25]

3977.0 [75]

5.5

0.01

138.7

12107.0

10

2.3

3.4

398.0 [40]

5560.0 [70]

16.4

0.04

91.8

12849.0

11

5.1

12.6

397.0 [75]

6309.0 [95]

43.6

0.11

79.6

11412.0

12

4.7

28.3

270.0 [30]

5591.0 [90]

26.5

0.09

95.3

2653.0

13

7.6

19.8

162.0 [75]

5347.0 [> 95]

10.5

0.06

206.4

9531.0

14

14.0

6.4

171.0 [40]

3311.0 [50]

4.3

0.02

201.3

8290.0

15

24.5

15.6

495.0 [90]

4620.0 [80]

16.6

0.03

103.9

4284.0

16

11.4

10.6

312.0 [> 50]

4940.0 [> 95]

38.1

0.12

209.9

14084.0

17

16.2

21.7

325.0 [60]

5073.0 [90]

52.5

0.16

157.8

14614.0

18

14.0

13.0

526.0 [90]

5843.0 [> 90]

52.5

0.09

76.6

10029.0

19

-

15.3

364.0 [25]

6309.0 [> 95]

14.2

0.03

122.7

9099.0

20

13.2

14.4

454.0 [85]

6439.0 [> 95]

48.0

0.1

193.5

11897.0

21

4.6

5.0

126.0 [50]

3704.0 [> 90]

3.1

0.02

146.5

6053.0

22

24.3

16.9

157.0 [30]

4279.0 [> 95]

6.8

0.04

103.3

6285.0

The mean concentration of IGF-1 in the study group was 330.5 (178.0) ng/mL and was insignificantly higher in girls than in boys (p = 0.09). In the Tanner stage 1 group, a positive correlation was found between IGF-1 concentration and height (r = 0.682, p = 0.021). The mean concentration of IGFBP-3 in the study group was 4849.6 (1046.3) ng/mL and was insignificantly higher in girls than in boys (p = 0.077). In the Tanner stage 1 group, a positive correlation was found between IGFBP-3 concentration and height (r = 0.638, p = 0.035). In the Tanner 5 stage group, a negative correlation was found between IGFBP-3 concentration and height (r = –0.618, p = 0.043). The mean concentration of free IGF-1 was insignificantly higher in the study group than in the control group (p = 0.160) and insignificantly higher in girls than in boys (p = 0.203). Sex had a statistically significant impact on the concentration of free IGF-1 in the Tanner stage 1 group (p = 0.024). In the Tanner 5 stage group, positive correlations were found between the concentration of free IGF-1 and BMI (p = 0.011) and SDS of body weight (p=0.036). In addition, positive correlations were found between the concentration of free IGF-1 and height (r = 0.441, p = 0.040) and HSDS (r = 0.607, p = 0.003). The mean free IGF-1/IGF-1 ratio was insignificantly higher in the study group than in the control group (p = 0.667). Similar average values were recorded in boys (0.071) and girls (0.068). The mean concentration of IGFBP-5 was significantly higher in the control group than in the study group (p = 0.037) and insignificantly higher in boys than in girls (p = 0.09). In the Tanner 5 stage group, a positive correlation was found between IGFBP-5 concentration and height (r = 0.627, p = 0.039). In the Tanner stage 1 group, a negative correlation was found between the concentration of IGFBP-5 and IGF-1 (r = –0.645, p = 0.032). The mean concentration of ALS was insignificantly higher in the study group than in the control group (p = 0.151) and insignificantly higher in girls than in boys (p = 0.083). Comprehensive information about the correlations within the study group and between the study group and the control group are presented in Tables 4 and 5.

Table 4. Correlations of selected biochemical and auxological parameters in the study group

Th1 + G1 (n = 11)

Th5 + G5 (n = 11)

Study group (n = 22)

R

P

R

P

R

P

IGF-1 to height

0.682*

0.021*

–0.555

0.077

0.269

0.226

IGF-1 to HSDS

0.419

0.199

0.364

0.272

0.339

0.122

IGF-1 to GH

0.232

0.492

0.247

0.465

0.292

0.187

Free IGF-1 to height

0.736*

0.010*

0.160

0.639

0.441*

0.040*

Free IGF-1 to HSDS

0.627*

0.039*

0.615*

0.044*

0.607*

0.003*

Free IGF-1 to BMI

–0.132

0.699

0.731

0.011

0.334

0.129

Free IGF-1 to weight SDS

–0.119

0.728

0.635

0.036

0.418

0.053

Free IGF-1 to GH

0.073

0.831

–0.140

0.682

–0.105

0.642

Free IGF-1/IGF-1 to BMI

–0.099

0.773

0.566

0.069

0.247

0.267

Free IGF-1/IGF-1 to weight SDS

–0.221

0.514

0.354

0.286

0.262

0.238

Free IGF-1/IGF-1 to GH

–0.138

0.687

–0.318

0.340

–0.228

0.307

IGFBP-3 to height

0.638*

0.035*

–0.618*

0.043*

0.101

0.655

IGFBP-3 to HSDS

0.263

0.435

0.273

0.417

0.298

0.179

GH to height

0.073

0.831

–0.050

–0.898

0.002

0.995

GH to HSDS

0.000

1.000

–0.050

0.898

–0.044

0.855

IGFBP-5 to IGF-1

–0.645*

0.032*

0.118

0.729

–0.356

0.104

IGFBP-5 to free IGF-1

–0.327

0.326

0.282

0.400

0.047

0.836

IGFBP-5 to IGFBP-3

–0.464

0.151

0.155

0.650

–0.167

0.457

IGFBP-5 to GH

–0.232

0.492

0.142

0.678

–0.051

0.822

IGFBP-5 to weight SDS

–0.023

0.947

0.141

0.679

0.209

0.350

IGFBP-5 to BMI

–0.383

0.245

0.401

0.222

0.157

0.485

IGFBP-5 to height

–0.455

0.160

0.627

0.039

–0.143

0.0526

IGFBP-5 to HSDS

–0.128

0.709

0.409

0.212

0.103

0.647

ALS to IGF-1

0.318

0.340

0.091

0.790

0.302

0.172

ALS to free IGF-1

0.418

0.201

0.082

0.811

0.343

0.118

ALS to IGFBP-3

0.364

0.272

0.318

0.340

0.358

0.102

ALS to IGFBP-5

–0.082

0.811

–0.100

0.770

–0.003

0.990

ALS to GH

0.109

0.749

–0.333

0.316

–0.070

0.757

ALS to weight SDS

0.169

0.619

0.533

0.091

0.391

0.072

ALS to BMI

0.173

0.611

0.269

0.424

0.375

0.085

ALS to height

0.045

0.894

–0.518

0.102

–0.129

0.566

ALS to HSDS

–0.068

0.842

0.073

0.832

0.015

0.948

Table 5. Statistical differences in biochemical parameters within the study group according to the stage of puberty and sex (left part of the table) and statistical differences in the values of biochemical parameters between the study group and the control group according to the stage of puberty and sex (right part of the table)

Girls (n = 16)

Boys (n = 6)

p

Study group (n = 22)

Control group (n = 9)

p

ALS [ng/mL]

10,088.9 ± 3676.9

7853.0 ± 1451.5

0.083

94,791.0 ± 3346.2

7268.3 ± 3867.6

0.151

IGFBP-5 [ng/mL]

110.6 ± 45.0

165.0 ± 65.5

0.098

125.5 ± 55.7

209.7 ± 120.6

0.037

Free IGF-1 [ng/mL]

27.4 ± 17.6

18.9 ± 19.4

0.203

25.1 ± 18.1

14.5 ± 8.9

0.160

Free IGF-1/IGF-1

0.069 ± 0.05

0.071 ± 0.05

0.858

0.07 ± 0.04

0.05 ± 0.02

0.203

Th1 (n = 7)

G1 (n = 4)

p

Study group Th1 (n = 7)

Control group Th1 (n = 2)

p

ALS [ng/mL]

8722.5 ± 4387.1

7519.2 ± 1685.5

0.527

8722.6 ± 4387.2

12,488.0 ± 2439.5

0.500

IGFBP-5 [ng/mL]

94.5 ± 33.9

156.9 ± 61.8

0.230

94.5 ± 34.0

108.1 ± 2.2

0.222

Free IGF-1 [ng/mL]

29.6 ± 18.4

7.3 ± 4.1

0.024

29.6 ± 18.4

16.4 ± 8.2

0.500

Free IGF-1/IGF-1

0.08 ± 0.04

0.04 ± 0.03

0.109

0.08 ± 0.04

0.07 ± 0.01

0.667

Th5 (n = 9)

G5 (n = 2)

p

Study group Th5 (n = 9)

Control group Th5 (n = 2)

p

ALS [ng/mL]

11,151.0 ± 2830.2

8520.5 ± 820.9

0.218

11,151.7 ± 2830.2

4280.5 ± 4636.5

0.073

IGFBP-5 [ng/mL]

123.1 ± 50.4

181.3 ± 96.3

0.436

123.1 ± 50.4

142.2 ± 59.3

0.727

Free IGF-1 [ng/mL]

25.8 ± 17.9

42.1 ± 14.7

0.327

25.8 ± 17.9

19.0 ± 14.6

0.727

Free IGF-1/IGF-1

0.06 ± 0.05

0.12 ± 0.01

0.218

0.06 ± 0.05

0.05 ± 0.03

0.909

Th1 + G1 (n = 11)

Th5 + G5 (n = 11)

p

Study group G1 (n = 4)

Control group G1 (n = 3)

p

ALS [ng/mL]

8285.0 ± 3573.4

10673.3 ± 2758.3

0.116

7519.3 ± 1685.6

7583.7 ± 1445.2

0.857

IGFBP-5 [ng/mL]

117.2 ± 53.2

133.7 ± 59.3

0.847

157.0 ± 61.8

279.1 ± 159.1

0.400

Free IGF-1 [ng/mL]

21.4 ± 18.3

28.7 ± 17.9

0.300

7.3 ± 4.1

9.8 ± 4.7

0.629

Free IGF-1/IGF-1

0.07 ± 0.04

0.07 ± 0.05

0.797

0.04 ± 0.03

0.04 ± 0.03

0.857

Study group Th1 (n = 7)

Study group Th5 (n = 9)

p

Study group G5 (n = 2)

Control group G5 (n = 2)

p

ALS [ng/mL]

8722.6 ± 4387.2

11151.7 ± 2830.2

0.252

8520.5 ± 821.0

4563.5 ± 874.7

0.333

IGFBP-5 [ng/mL]

94.5 ± 34.0

123.1 ± 50.4

0.299

181.4 ± 96.4

274.7 ± 97.3

0.667

Free IGF-1

29.6 ± 18.4

25.8 ± 17.9

0.606

42.1 ± 14.7

15.1 ± 14.1

0.333

Free IGF-1/IGF-1

0.08 ± 0.04

0.06 ± 0.05

0.351

0.12 ± 0.01

0.03 ± 0.03

0.333

Study group G1 (n = 4)

Study group G5 (n = 2)

p

ALS [ng/mL]

7519.3 ± 1685.6

8520.5 ± 821.0

0.800

IGFBP-5 [ng/mL]

157.0 ± 61.8

181.4 ± 96.4

0.800

Free IGF-1

7.3 ± 4.1

42.1 ± 14.7

0.133

Free IGF-1/IGF-1

0.04 ± 0.03

0.12 ± 0.01

0.133

Genetic analysis

None of the patients in the study group carried the previously described mutations in the PAPP-A2 gene or mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein. In 4 patients (Patients 4, 8, 10, and 13), the known, non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 outside the coding site of the catalytic domain (Fig. 1) was detected. This polymorphism has been deposited in the ExAC database (https://gnomad.broadinstitute.org/, access date: 10 April 2020) and 1000G (http://www.internationalgenome.org/1000-genomes-browsers/, access date: 10 April 2020) and has no clinical significance.

179158.png
Figure 1. Chromatogram showing the polymorphism of the PAPP-A2 gene (rs10913241: c.2328C>T) detected in Patients 4, 8, 10, and 13

Discussion

The diagnosis of ISS is based on the exclusion of known causes. Endocrinologists agree that Turner syndrome should be excluded in all girls with ISS, even those without characteristic phenotypic features. Additionally, it is recommended to rule out chromosomal aberrations in boys with atypically developed external genitalia [13].

In the case of familial short stature, the probability of finding a genetic cause is low [14]. When the height of one of the parents is more than –2 SD, the possibility of autosomal dominant mutations in the family should be considered. A recent study conducted on a group of patients meeting the criteria for SGA or growth hormone deficiency with concomitant severe familial short stature revealed a monogenic disorder in 52% (17/33 patients) [15]. In our study, patients whose height was –2.0 SD or less were included; in 13 patients, the height of one parent was –2.0 SD or less.

Evaluation of IGF-1 in the initial assessment of a patient with short stature and during rhGH therapy remains a crucial indicator of treatment effectiveness and safety. When we estimate the concentration of IGF-1, we evaluate its total concentration, which includes inactive IGF-1. The advantage of the evaluation of free IGF-1 over total IGF-1 has not been demonstrated; therefore, there are no reasons to include the evaluation of free IGF-1 in the routine diagnosis of short stature [16]. In patients with obesity, the concentration of free IGF-1 may be higher due to the suppressive effect of insulin on the concentration of IGFBP-1, and according to reports, the concentration of IGF-1 may be reduced, elevated, or within normal limits [17, 18]. In our study group, one patient was diagnosed as obese; her free IGF-1 concentration was elevated (Tab. 3), and the ratio of free IGF-1 to total IGF-1 was only slightly elevated (0.04) compared to the reference value (0.02). Kamoda et al., in their study assessing the concentrations of free IGF-1, total IGF-1, and IGFBP-1 in a group of 19 patients with ISS, obtained significantly lower concentrations of free IGF-1 (p < 0.05), and the concentration of total IGF-1 was insignificantly lower compared to the control group [19]. Jull et al. analysed the concentration of free IGF-1 in a group of 1430 healthy children and adults and showed that the concentration of free IGF-1 remains low during infancy and early childhood, increases to the highest average concentration during puberty, and then returns to prepubertal values without further changing with age [20]. In the prepubertal group, 3.3% of patients had a concentration of free IGF-1 below the detection threshold, although they were not diagnosed with growth hormone deficiency [20]. In the paediatric group, there were differences according to sex. In girls, an increase in the concentration of free IGF-1 was observed 1–2 years earlier than in boys, which coincides with the physiological course of sexual maturation. In addition, girls had significantly higher concentrations of free IGF-1 than boys. These sex differences were not observed in the adult population [20]. Kawai et al. observed that in infancy, the ratio of free IGF-1/IGF-1 was significantly higher [21]. In our study group, as in the available reports, higher values of free IGF-1 were measured in girls in both the study group and in the control group, except for the Tanner stage 5 subgroup, where higher values were noted in boys. However, the group of boys at this stage of puberty consisted of only 2 patients, so further research on a larger group is needed to draw proper conclusions. Sex showed a statistically significant effect on the concentration of free IGF-1 in Tanner stage 1 patients. A positive correlation was found between the concentration of free IGF-1 and height and HSDS. In the study group, the concentration of free IGF-1 correlated better with height and HSDS than the concentration of IGF-1, and this correlation can be used in the analysis of the growth curve and to estimate the final height of patients with ISS. Jull et al. assessed the concentration of free IGF-1 using the immunoradiometric method (Diagnostic System Laboratories, Webster TX). However, this cannot be the reason for the differences in the obtained results, especially the differences between sexes. Jull et al. evaluated the concentration of free IGF-1 in a group of approximately 800 healthy children, and our control and study groups were small. Research on larger, more representative groups is necessary. Two patients (Patients 4 and 9) from the Tanner stage 5 group and one (Patient 21) from the Tanner stage 1 group exhibited values of free IGF-1 and the free IGF-1/IGF-1 ratio in the normal range. The remaining patients from the study group had values above the reference range for the appropriate stage of puberty. Despite free IGF-1 values greater than the reference range for a given stage of puberty, Patient 14 had a free IGF-1/IGF-1 ratio within the described reference range, which suggests a very high concentration of IGF-1. Three patients (Patient 15 from the Tanner stage 1 group and Patients 5 and 19 from the Tanner stage 5 group) had values of free IGF-1 above the reference range for a given stage of puberty and free IGF-1/IGF-1 ratios slightly above the reference range (0.03). Nineteen (19/22) patients had free IGF-1 levels above the reference values for puberty. In 4 (4/22) patients, these values exceeded the reference value by less than one-fold. Eight patients (8/22) exceeded it by less than 5-fold. In 4 patients (4/22), the measured values exceeded the reference value by 5- to 10-fold. Three patients (3/22) had values exceeding the reference range by 10-fold, and all 3 patients were female patients in the Tanner stage 1 group. In this group, the IGF-1 concentration was above the 50th centile, and the maximum values of the growth hormone concentration were 12.6 ng/mL, 21.7 ng/mL, and 14.0 ng/mL (Tab. 3). Due to the nature of the study, the progressive loss of growth rate, and severe ISS, the measured values of free IGF-1 concentration may indicate the resistance of peripheral tissues to IGF-1, which can be confirmed by high concentrations of IGF-1 and free IGF-1 and inadequate growth rate. Mutations in the IGF-1 receptor (IGF-1R) gene are very rare and are characterized by severely decreased birth weight and length, microcephaly and severe short stature with an HSDS of –7 [22]. None of our patients presented with an extremely short stature. However, this does not rule out the possibility of a mutation in the IGF-1R gene or the occurrence of a milder variant. It is also possible that the process of postreceptor signal transduction was disturbed in patients in the study group.

According to previous studies, a decrease in IGFBP-5 concentration is observed with age. Positive correlations between the concentration of IGFBP-5 and IGF-1, IGF-2, and ALS were previously described [23–25]. In the study group, a negative correlation between the concentration of IGFBP-5 and IGF-1 was found, and no correlations were found between the concentration of IGFBP-5 and free IGF-1, IGFBP-3, and ALS. In all patients from the study group, the concentration of IGFBP-5 was below the normal range.

The ALS concentration gradually increases during childhood, peaking during puberty. A statistically significant difference in ALS concentration by sex has been described, with significantly higher ALS concentrations in girls [26]. In the study group, higher values were observed among girls, similarly to previous reports, but no statistical significance was noted.

The genetic analysis of previously described mutations in the PAPP-A2 gene and the fragment of the PAPP-A2 gene encoding the fragment of catalytic domain with the active site of PAPP-A2 detected the known heterozygous polymorphism c.2328C>T (rs10913241) in exon 5, outside the coding site of the catalytic domain, in patients 4, 8, 10, and 13. According to data from the ExAC database (https://gnomad.broadinstitute.org/, access date: 20 February 2021), in patients under 30 years of age, 701 out of 2547 subjects were heterozygous carriers of the variant, which is a frequency of 0.27. In the European population, excluding the Finnish population, the rs10913241 polymorphism in the PAPP-A2 gene was detected in 20,498 cases out of 112,964 analysed, of which 1891 were homozygous, which is an incidence of 0.18. The frequency of this polymorphism varies depending on the population studied. In the study group, 4 out of 22 patients exhibited this polymorphism, which had a frequency of 0.18, consistent with that reported for the European population excluding the Finnish population.

The main limitation of this study is undoubtedly the size of the study and control groups. Previous studies suggest that a large study population is needed to identify new, rare causes of ISS using next-generation sequencing. Our sample size was small, and genetic analysis of only one gene (PAPP-A2) was performed, which focused only on mutations previously described in the literature and in the gene region encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein. Further research should be carried out in a larger study group with the use of whole-exome sequencing. Adding a reduced concentration of free IGF-1 to the inclusion criteria allows researchers to focus only on the analysis of the PAPP-A2 gene.

Conclusions

Free IGF-1 correlates better with height and HSDS than total IGF-1. The free IGF-1/IGF-1 ratio and IGFBP-5 concentration may be helpful parameters for the prediction of final height in patients with ISS. The previously described mutations in the PAPP-A2 gene and mutations in exons 3, 4, and 5 encoding the fragment of catalytic domain with the active site of the PAPP-A2 protein were not detected; only the known, non-pathogenic, heterozygotic polymorphism c.2328C>T(rs10913241) in exon 5 of the PAPP-A2 gene was detected. Preliminary determination of free IGF-1 levels in a larger study group is necessary to estimate the potential risk of PAPP-A2 gene mutation occurrence in patients with ISS.

Data availability statement

The data supporting the findings of this study are available from the corresponding author upon reasonable request.

Ethics statement

Research was approved by the Bioethics Committee (consent of the Bioethics Committee of the Poznan University of Medical Sciences, resolution no 134/4 of 1 February 2018).

Author contributions

Conceptualisation: M.N., M.B.Z., A.R. Patient care and data collection: M.B.-Z., M.N. Methodology and data analysis: M.B.Z., M.N., A.R. Analysis and Interpretation: M.N., M.B.Z., A.R. Literature Search: M.B.Z., A.R. Writing original draft: M.B.Z. Writing review and editing: M.N., A.R. All authors have read and agreed to the published version of the manuscript.

Funding

The study was supported by funds from the Department of Paediatric Endocrinology and Rheumatology of Poznan University of Medical Sciences (No. 502-01-01104118-06037 to Marek Niedziela) and by a Young Scientists Grant from the Department of Paediatric Endocrinology and Rheumatology of Poznan University of Medical Sciences (No. 502-14-11041180-41226 to Magdalena Banaszak-Ziemska).

Conflict of interest

The authors declare no conflict of interests.

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